You could always use the Triboro...definitely out of the way, but they allow bikes. Or apparently the BX144 bus (somtimes) has a bike rack on the front of it! A sure sign of NYC bike friendliness!! I currently ride from Brooklyn to the Bronx, but haven't tried the route through Queens, although I hear it is better....Mackie said:I'm not bike commuting anymore - we moved and the city does not allow bikes over the Throgs Neck or Whitestone bridges - the 2 bridges that would get me to work.
When i was commuting Brooklyn to upper Manhattan I rode my old rigid Cannondale MTB with some skinny Panaracer slicks.
Also - my strategy was to bring all of my clothes in on one day so that I could commute unencumbered. This also made it easier if i needed to stop on the way home for some liquid refreshment & lock up the bike - didn't have to worry about getting panniers swiped or anythig like that.